OpenCB Open-source software for Computational Biology

Welcome To OpenCB

OpenCB Open-source software for Computational Biology

OpenCB provides advanced open-source software for the analysis of high-throughput genomic data. During the last years advances in high-throughput sequencing technologies are producing data at an unprecedented scale and bioinformatics encounter difficulties in storage and analysis of vast amounts of biological data. Biology has joined big data era and faces new challenges such as the storage, analysis, search, sharing and visualization of data that require new solutions.

OpenCB is organized in four different subprojects according to which problem they try to solve, this organization also helps to the development of the software as each of these subprojects share the same programming language and computing technologies that allow to get the best performance in each of them.

Publications

VARIANT: Command Line, Web service and Web interface for fast and accurate functional characterization of variants found by Next-Generation Sequencing.

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Using GPUs for the Exact Alignment of Short-Read Genetic Sequences by Means of the Burrows-Wheeler Transform

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CellBase, a comprehensive collection of RESTful web services for retrieving relevant biological information from heterogeneous sources.

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Multicore and Cloud-Based Solutions for Genomic Variant Analysis

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Genome Maps, a new generation genome browser.

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HPG pore: an efficient and scalable framework for nanopore sequencing data.

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